PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G230600.1.p
Common NamePRUPE_ppa008613mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 326aa    MW: 35527.2 Da    PI: 10.0728
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G230600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31254311359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Prupe.6G230600.1.p 254 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHNHS 311
                         99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.7E-18204250IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.8E-33240311IPR003657WRKY domain
PROSITE profilePS5081130.928247313IPR003657WRKY domain
SuperFamilySSF1182906.41E-27249311IPR003657WRKY domain
SMARTSM007742.6E-38252312IPR003657WRKY domain
PfamPF031065.2E-27254310IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAVDFMGYRN SSFSAKLEEN AVQEAASGLE SVEKLIRLLS QAQQNQHQDK YPSMVMDMDC  60
RAVADVAVSK FKKVISLLGR TRTGHARFRR APLTLTSGSS SSQNQAQTQE TFVKQAPLES  120
TKVYHATPIQ QIPPPLHHHS TVLESTKDSS TTINFSYSAT TSFMSSLTGD SDSKQPLSSS  180
AFQITNMSQV SSVGKPPLSS ASLKRKCSSD NLGSGKCGAG SSGRCHCSKK RKLRLKRVVR  240
VPAISLKMAD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERALDDPAML  300
VVTYEGEHNH SLSVAETSNL ILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-212503121576Probable WRKY transcription factor 4
2lex_A1e-212503121576Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.32690.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205552.10.0hypothetical protein PRUPE_ppa008613mg
SwissprotQ9STX01e-100WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLM5W0560.0M5W056_PRUPE; Uncharacterized protein
STRINGPOPTR_0007s10670.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-87WRKY DNA-binding protein 7